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| -rw-r--r-- | README | 6 |
1 files changed, 4 insertions, 2 deletions
@@ -2,7 +2,7 @@ This is a reimplementation of Xenomapper [1] in Haskell. Unlike the orginal it is significantly more focused in scope: only primary specific alignments are output. -Example usage: "xenomapper-hs primary-specific.bam primary.bam secondary.bam" +Example usage: "xenomapper primary-specific.bam primary.bam secondary.bam" The first argument is the output bam path, and the subsequent are the primary and secondary alignments. NB: the inputs must be name sorted @@ -16,7 +16,9 @@ to build, or if you have already cloned the repository then simply nix build -in the root. +in the root. You can also just: + + nix run git://vk3.wtf/xenomapper-hs.git primary-specific.bam primary.bam secondary.bam -- 1: https://github.com/genomematt/xenomapper |