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Diffstat (limited to 'day2/ex3-R/solution.nix')
-rw-r--r-- | day2/ex3-R/solution.nix | 19 |
1 files changed, 19 insertions, 0 deletions
diff --git a/day2/ex3-R/solution.nix b/day2/ex3-R/solution.nix new file mode 100644 index 0000000..7d40f88 --- /dev/null +++ b/day2/ex3-R/solution.nix @@ -0,0 +1,19 @@ +{bionix}: +with bionix; let + R = pkgs.rWrapper.override {packages = with pkgs.rPackages; [edgeR];}; + + counts = pkgs.fetchurl { + url = "https://raw.githubusercontent.com/ucdavis-bioinformatics-training/2018-September-Bioinformatics-Prerequisites/master/friday/counts.tsv"; + sha256 = "sha256-ZmZ+vC4mKnmZKVJqbnEujDngwnSTZAxvQaZaNClUUWE="; + }; +in + stage { + inherit counts; + name = "r-ex"; + + buildInputs = [R]; + + buildCommand = '' + Rscript ${./script.R} + ''; + } |