{bionix}: with bionix; let R = pkgs.rWrapper.override {packages = with pkgs.rPackages; [limma edgeR Mus_musculus RColorBrewer R_utils];}; in stage { name = "r-ex"; src = pkgs.fetchurl { url = "https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE63310&format=file"; sha256 = "sha256-jLII/e+SVNx4Fivb65WOF566fwFXFtdNLUs04S82++g="; }; buildInputs = [R]; buildCommand = '' tar xf $src mkdir $out Rscript ${./script.R} ''; }