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<title>bionix.git, branch master</title>
<subtitle>Functional, highly-reproducible bioinformatics pipelines</subtitle>
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<entry>
<title>migrate to latest zig std</title>
<updated>2025-03-13T23:27:37+00:00</updated>
<author>
<name>Justin Bedo</name>
<email>cu@cua0.org</email>
</author>
<published>2025-03-13T23:27:37+00:00</published>
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</entry>
<entry>
<title>deprecate platypus</title>
<updated>2024-11-12T04:50:42+00:00</updated>
<author>
<name>Justin Bedo</name>
<email>cu@cua0.org</email>
</author>
<published>2024-11-12T04:50:42+00:00</published>
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</entry>
<entry>
<title>migrate zig code and target baseline cpu</title>
<updated>2024-10-31T02:58:33+00:00</updated>
<author>
<name>Justin Bedo</name>
<email>cu@cua0.org</email>
</author>
<published>2024-10-31T02:58:33+00:00</published>
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<entry>
<title>bwa-mem2: 2.1 -&gt; 2.2.1</title>
<updated>2024-10-31T02:57:42+00:00</updated>
<author>
<name>Justin Bedo</name>
<email>cu@cua0.org</email>
</author>
<published>2024-10-31T02:52:24+00:00</published>
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<entry>
<title>strip-store-paths: update to latest zig</title>
<updated>2024-06-04T05:15:50+00:00</updated>
<author>
<name>Justin Bedo</name>
<email>cu@cua0.org</email>
</author>
<published>2024-06-04T05:15:50+00:00</published>
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<entry>
<title>strip-store-paths: update for latest zig</title>
<updated>2023-12-05T22:40:41+00:00</updated>
<author>
<name>Justin Bedo</name>
<email>cu@cua0.org</email>
</author>
<published>2023-12-05T22:40:41+00:00</published>
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<entry>
<title>linkOutputs: fix shell interpretation of destination name</title>
<updated>2023-10-10T02:27:07+00:00</updated>
<author>
<name>Justin Bedo</name>
<email>cu@cua0.org</email>
</author>
<published>2023-10-10T02:25:19+00:00</published>
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<entry>
<title>ampliconarchitect: init</title>
<updated>2023-10-10T02:26:17+00:00</updated>
<author>
<name>Justin Bedo</name>
<email>cu@cua0.org</email>
</author>
<published>2023-05-25T01:50:52+00:00</published>
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</entry>
<entry>
<title>samtools.queryRegion: queries regions from a fasta file</title>
<updated>2023-03-27T23:01:10+00:00</updated>
<author>
<name>lezhou8</name>
<email>lezhou@protonmail.com</email>
</author>
<published>2023-03-24T00:15:50+00:00</published>
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<id>59edb7d9c37a688c8c408508c1a9ae5d37df348f</id>
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Only the indexing functionality of samtools faidx is used, rather than also the region querying functionality.
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Only the indexing functionality of samtools faidx is used, rather than also the region querying functionality.
</pre>
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</content>
</entry>
<entry>
<title>platypus.callVariants: strip platypus options from VCF output</title>
<updated>2023-02-27T02:45:10+00:00</updated>
<author>
<name>lezhou8</name>
<email>lezhou@protonmail.com</email>
</author>
<published>2023-01-30T01:37:39+00:00</published>
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<id>4ef81f5f631f5766287d3bbcb6bd1238259f0523</id>
<content type='text'>
The detailed options embedded into the VCF reduces determinism, as it
includes extranous details such as number of cores.
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The detailed options embedded into the VCF reduces determinism, as it
includes extranous details such as number of cores.
</pre>
</div>
</content>
</entry>
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