<feed xmlns='http://www.w3.org/2005/Atom'>
<title>bionix.git/examples/ex-tnpair, branch master</title>
<subtitle>Functional, highly-reproducible bioinformatics pipelines</subtitle>
<link rel='alternate' type='text/html' href='https://vk3.wtf/cgit/bionix.git/'/>
<entry>
<title>update ex-tnpair cluster example</title>
<updated>2021-11-03T06:57:41+00:00</updated>
<author>
<name>Justin Bedo</name>
<email>cu@cua0.org</email>
</author>
<published>2021-11-03T06:57:41+00:00</published>
<link rel='alternate' type='text/html' href='https://vk3.wtf/cgit/bionix.git/commit/?id=32c05eb5f9b3006e48cd533688cc1e7980e185e3'/>
<id>32c05eb5f9b3006e48cd533688cc1e7980e185e3</id>
<content type='text'>
- fix bug with deprecated use of slurm tree
- remove torque support
</content>
<content type='xhtml'>
<div xmlns='http://www.w3.org/1999/xhtml'>
<pre>
- fix bug with deprecated use of slurm tree
- remove torque support
</pre>
</div>
</content>
</entry>
<entry>
<title>treewide reformatting and simplification</title>
<updated>2021-10-29T06:39:01+00:00</updated>
<author>
<name>Justin Bedo</name>
<email>cu@cua0.org</email>
</author>
<published>2021-10-29T06:39:01+00:00</published>
<link rel='alternate' type='text/html' href='https://vk3.wtf/cgit/bionix.git/commit/?id=bac9248a5e08e8afdf5485a6e27cfe72e1ca5090'/>
<id>bac9248a5e08e8afdf5485a6e27cfe72e1ca5090</id>
<content type='text'>
- simplify with statix
- reformat with nixpkgs-fmt
</content>
<content type='xhtml'>
<div xmlns='http://www.w3.org/1999/xhtml'>
<pre>
- simplify with statix
- reformat with nixpkgs-fmt
</pre>
</div>
</content>
</entry>
<entry>
<title>bugfix: use unsorted type for alignment output</title>
<updated>2021-07-27T23:17:56+00:00</updated>
<author>
<name>Justin Bedo</name>
<email>cu@cua0.org</email>
</author>
<published>2021-07-27T22:07:32+00:00</published>
<link rel='alternate' type='text/html' href='https://vk3.wtf/cgit/bionix.git/commit/?id=ed98174bbefc85f9895c870fdb7518e2a534a150'/>
<id>ed98174bbefc85f9895c870fdb7518e2a534a150</id>
<content type='text'>
Most aligners are only pseudo-name sorted (i.e., pairs adjacant).
</content>
<content type='xhtml'>
<div xmlns='http://www.w3.org/1999/xhtml'>
<pre>
Most aligners are only pseudo-name sorted (i.e., pairs adjacant).
</pre>
</div>
</content>
</entry>
<entry>
<title>rewrite cluster example to usse overlay</title>
<updated>2020-11-17T20:44:19+00:00</updated>
<author>
<name>Justin Bedo</name>
<email>cu@cua0.org</email>
</author>
<published>2020-11-17T20:44:19+00:00</published>
<link rel='alternate' type='text/html' href='https://vk3.wtf/cgit/bionix.git/commit/?id=233b915bd2bfe8abe302874f7b7467ad39048a2c'/>
<id>233b915bd2bfe8abe302874f7b7467ad39048a2c</id>
<content type='text'>
</content>
<content type='xhtml'>
<div xmlns='http://www.w3.org/1999/xhtml'>
<pre>
</pre>
</div>
</content>
</entry>
<entry>
<title>update tnpair example to run on colo828</title>
<updated>2020-04-09T23:47:44+00:00</updated>
<author>
<name>Justin Bedo</name>
<email>cu@cua0.org</email>
</author>
<published>2020-04-09T23:47:44+00:00</published>
<link rel='alternate' type='text/html' href='https://vk3.wtf/cgit/bionix.git/commit/?id=cdb7056a14915354d879c519dd396204e4af3959'/>
<id>cdb7056a14915354d879c519dd396204e4af3959</id>
<content type='text'>
</content>
<content type='xhtml'>
<div xmlns='http://www.w3.org/1999/xhtml'>
<pre>
</pre>
</div>
</content>
</entry>
<entry>
<title>update exampes to use nixpkgs.lib.pipe</title>
<updated>2020-03-26T23:59:44+00:00</updated>
<author>
<name>Justin Bedo</name>
<email>cu@cua0.org</email>
</author>
<published>2020-03-26T23:59:44+00:00</published>
<link rel='alternate' type='text/html' href='https://vk3.wtf/cgit/bionix.git/commit/?id=d4fe5ce2aaea3f951fe21094ccfa90360c12c760'/>
<id>d4fe5ce2aaea3f951fe21094ccfa90360c12c760</id>
<content type='text'>
</content>
<content type='xhtml'>
<div xmlns='http://www.w3.org/1999/xhtml'>
<pre>
</pre>
</div>
</content>
</entry>
<entry>
<title>linkOutputs: refactor output linking expression</title>
<updated>2019-07-08T05:06:58+00:00</updated>
<author>
<name>Justin Bedo</name>
<email>cu@cua0.org</email>
</author>
<published>2019-07-04T04:26:52+00:00</published>
<link rel='alternate' type='text/html' href='https://vk3.wtf/cgit/bionix.git/commit/?id=be187bfeb074e5c2b65f25f3dcdb82a98b15570d'/>
<id>be187bfeb074e5c2b65f25f3dcdb82a98b15570d</id>
<content type='text'>
The existing linkDrv only has a singular output, making it difficult to
separate the various types of output. The new functionality replaces the
old with attribute sets defining the outputs.

The old linkDrv is deprecated.
</content>
<content type='xhtml'>
<div xmlns='http://www.w3.org/1999/xhtml'>
<pre>
The existing linkDrv only has a singular output, making it difficult to
separate the various types of output. The new functionality replaces the
old with attribute sets defining the outputs.

The old linkDrv is deprecated.
</pre>
</div>
</content>
</entry>
<entry>
<title>Add examples and example README</title>
<updated>2019-04-30T03:05:17+00:00</updated>
<author>
<name>Justin Bedo</name>
<email>cu@cua0.org</email>
</author>
<published>2019-04-30T03:05:17+00:00</published>
<link rel='alternate' type='text/html' href='https://vk3.wtf/cgit/bionix.git/commit/?id=d517a934f570427e46be8d83aa2ae4b045b069e8'/>
<id>d517a934f570427e46be8d83aa2ae4b045b069e8</id>
<content type='text'>
</content>
<content type='xhtml'>
<div xmlns='http://www.w3.org/1999/xhtml'>
<pre>
</pre>
</div>
</content>
</entry>
<entry>
<title>cleanup examples and stray files</title>
<updated>2019-04-29T23:47:49+00:00</updated>
<author>
<name>Justin Bedo</name>
<email>cu@cua0.org</email>
</author>
<published>2019-04-29T23:47:49+00:00</published>
<link rel='alternate' type='text/html' href='https://vk3.wtf/cgit/bionix.git/commit/?id=a1d18efc18772a233aa759b622c3a9960824f109'/>
<id>a1d18efc18772a233aa759b622c3a9960824f109</id>
<content type='text'>
</content>
<content type='xhtml'>
<div xmlns='http://www.w3.org/1999/xhtml'>
<pre>
</pre>
</div>
</content>
</entry>
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