bionix.git/examples, branch masterFunctional, highly-reproducible bioinformatics pipelineshttps://vk3.wtf/cgit/bionix.git/atom/examples?h=master2024-11-12T04:50:42Zdeprecate platypus2024-11-12T04:50:42ZJustin Bedocu@cua0.org2024-11-12T04:50:42Zurn:sha1:58fa67ffd09d3bdfe72bef7c873ef94190dc6708fix missing flag in examples README2022-11-15T01:29:08ZJustin Bedocu@cua0.org2022-11-15T01:25:41Zurn:sha1:288124450ddf2c7843e9041a2d36bcdb6ba7154aFix typo in example README2021-11-25T00:54:22ZJustin Bedocu@cua0.org2021-11-25T00:54:22Zurn:sha1:4310908aabe32d9039c4dff846d836aa94fa77e4update ex-tnpair cluster example2021-11-03T06:57:41ZJustin Bedocu@cua0.org2021-11-03T06:57:41Zurn:sha1:32c05eb5f9b3006e48cd533688cc1e7980e185e3
- fix bug with deprecated use of slurm tree
- remove torque support
treewide reformatting and simplification2021-10-29T06:39:01ZJustin Bedocu@cua0.org2021-10-29T06:39:01Zurn:sha1:bac9248a5e08e8afdf5485a6e27cfe72e1ca5090
- simplify with statix
- reformat with nixpkgs-fmt
bugfix: use unsorted type for alignment output2021-07-27T23:17:56ZJustin Bedocu@cua0.org2021-07-27T22:07:32Zurn:sha1:ed98174bbefc85f9895c870fdb7518e2a534a150
Most aligners are only pseudo-name sorted (i.e., pairs adjacant).
Add -I flags to example invocations2021-02-16T10:18:31ZJustin Bedocu@cua0.org2021-02-16T10:18:01Zurn:sha1:834d736a00f5bd7155cb137d5a3e94e1413e8ada
BioNix is expected to be in the search path, which by default is not the case.
Explicitly adding include flags to the build invocation in the examples
simplifies execution for new users (issue #17).
rewrite cluster example to usse overlay2020-11-17T20:44:19ZJustin Bedocu@cua0.org2020-11-17T20:44:19Zurn:sha1:233b915bd2bfe8abe302874f7b7467ad39048a2cupdate example to not use explicit path reference2020-11-03T03:08:32ZJustin Bedocu@cua0.org2020-11-03T03:08:32Zurn:sha1:a50933a96096d53c341b30d487362d0913977574update tnpair example to run on colo8282020-04-09T23:47:44ZJustin Bedocu@cua0.org2020-04-09T23:47:44Zurn:sha1:cdb7056a14915354d879c519dd396204e4af3959