samtools.queryRegion: queries regions from a fasta file2023-03-27T23:01:10+00:00lezhou8lezhou@protonmail.com2023-03-24T00:15:50+00:0059edb7d9c37a688c8c408508c1a9ae5d37df348f
Only the indexing functionality of samtools faidx is used, rather than also the region querying functionality.
Only the indexing functionality of samtools faidx is used, rather than also the region querying functionality.
platypus.callVariants: strip platypus options from VCF output2023-02-27T02:45:10+00:00lezhou8lezhou@protonmail.com2023-01-30T01:37:39+00:004ef81f5f631f5766287d3bbcb6bd1238259f0523
The detailed options embedded into the VCF reduces determinism, as it
includes extranous details such as number of cores.
The detailed options embedded into the VCF reduces determinism, as it
includes extranous details such as number of cores.
octopus.call: fix naming error in throw2022-10-24T02:37:57+00:00Justin Bedocu@cua0.org2022-10-24T02:36:31+00:001a7ed52d1b3de6e1e7c8525cca3333c06930b90a
last: align only a single fastq file2022-09-26T01:51:52+00:00Justin Bedocu@cua0.org2022-08-23T08:36:40+00:0081cfa50e6b345942951b68eac0e184ea025f2ae4
last: update for latest version2022-08-23T08:36:28+00:00Justin Bedocu@cua0.org2022-08-23T08:36:28+00:005107449eeb29963b98cb5b6ded6418d930590c23
hatchet: include gurobi dependency if needed2022-06-18T22:31:23+00:00Justin Bedocu@cua0.org2022-06-18T22:27:00+00:002d7a2b001936a8a047118af0f99a9cbfd38d258a