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| -rw-r--r-- | references.bib | 17 | ||||
| -rw-r--r-- | slides.tex | 12 |
2 files changed, 23 insertions, 6 deletions
diff --git a/references.bib b/references.bib index 4f3708b..2ec514c 100644 --- a/references.bib +++ b/references.bib @@ -176,12 +176,17 @@ Year = {2013}, eprinttype = {arXiv}, eprint = {q-bio/1303.3997}, } -@online{bioshake, -author={Justin Bed\H{o}}, -title={Bioshake: a Haskell EDSL for bioinformatics pipelines}, -year=2018, -eprinttype={bioRxiv}, -eprint = {http://doi.org/10.1101/529479} +@article{Bed2019, + doi = {10.7717/peerj.7223}, + url = {https://doi.org/10.7717/peerj.7223}, + year = {2019}, + month = jul, + publisher = {{PeerJ}}, + volume = {7}, + pages = {e7223}, + author = {Justin Bed{\H{o}}}, + title = {{BioShake}: a Haskell {EDSL} for bioinformatics workflows}, + journal = {{PeerJ}} } @online{bioshake-git, title = {Bioshake}, @@ -99,4 +99,16 @@ \end{center} \end{frame} +\begin{frame} + \frametitle{BioNix contributions} + \begin{enumerate} + \item Builds on Nix, a robust functional package manager + \item Manages both software and workflows within the one system + \item Implicitly specifies its entire computational environment + \item Simple, purely functional domain-specific language, simplifying specifying workflows + to function composition + \item Typing to reduce errors~\autocite{Bed2019} + \end{enumerate} +\end{frame} + \end{document} |