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Diffstat (limited to 'examples/ex-tnpair/tnpair.nix')
| -rw-r--r-- | examples/ex-tnpair/tnpair.nix | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/examples/ex-tnpair/tnpair.nix b/examples/ex-tnpair/tnpair.nix index 70f5514..9e6befe 100644 --- a/examples/ex-tnpair/tnpair.nix +++ b/examples/ex-tnpair/tnpair.nix @@ -12,6 +12,7 @@ let preprocess = s: pipe s [ fetch (align { preset = "sr"; ref = ref.grch38.seq; flags = "-R'@RG\\tID:${s.type}\\tSM:${s.type}'"; }) + (sort { nameSort = true; }) (fixmate {}) (sort { }) (markdup { }) |