diff options
Diffstat (limited to 'examples')
| -rw-r--r-- | examples/call.nix | 2 | ||||
| -rw-r--r-- | examples/default.nix | 4 |
2 files changed, 3 insertions, 3 deletions
diff --git a/examples/call.nix b/examples/call.nix index 90832ee..8c4f073 100644 --- a/examples/call.nix +++ b/examples/call.nix @@ -2,7 +2,7 @@ # with the Platypus variant caller. Each input is preprocessed by aligning # against a reference genome (defaults to GRCH38), fixing mate information, and # marking duplicates. Finally platypus is called over all samples. -{bionix ? import ./.. {} +{bionix ? import <bionix> {} ,inputs ,ref ? bionix.ref.grch38.seq }: diff --git a/examples/default.nix b/examples/default.nix index e048f4e..9aace38 100644 --- a/examples/default.nix +++ b/examples/default.nix @@ -1,6 +1,6 @@ # This example uses the pipelines specified in the call.nix file on the # synthetic data in this directory. -{bionix ? import ./.. {}}: +{bionix ? import <bionix> {}}: with bionix; @@ -16,7 +16,7 @@ let }; input2 = fetchFastQ { - url = "https://github.com/PapenfussLab/bionix/raw/master/examples/sample1-2.fq"; + url = "https://github.com/PapenfussLab/bionix/raw/master/examples/sample1-2.fq"; sha256 = "0czk85km6a91y0fn4b7f9q7ps19b5jf7jzwbly4sgznps7ir2kdk"; }; } |