diff options
Diffstat (limited to 'test-tnpair.nix')
| -rw-r--r-- | test-tnpair.nix | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix index 2ea93ae..4d6a794 100644 --- a/test-tnpair.nix +++ b/test-tnpair.nix @@ -51,9 +51,9 @@ let (ln (facets.callCNV {} {vcf = tnpairResult.platypusVars; bams = with tnpairResult.alignments; [ normal tumour ];}) "facets") (ln tnpairResult.variants "strelka") (ln tnpairResult.glvariants "strelka-gl") - (ln (strelka.indels tnpairResult.variants) "strelka.indels.vcf") - (ln (strelka.snvs tnpairResult.variants) "strelka.snvs.vcf") - (ln (strelka.variants tnpairResult.glvariants) "strelka.gl.vcf") + (ln tnpairResult.variants.indels "strelka.indels.vcf") + (ln tnpairResult.variants.snvs "strelka.snvs.vcf") + (ln tnpairResult.glvariants.variants "strelka.gl.vcf") (ln (bowtie.align {inherit ref;} tnpair.normal.files) "alignments/bowtie-normal.bam") (ln (minimap2.align {inherit ref; preset = "sr"; } tnpair.normal.files) "alignments/minimap2-normal.bam") (ln (snap.align {inherit ref; } tnpair.normal.files) "alignments/snap-normal.bam") |