1 files changed, 18 insertions, 15 deletions
diff --git a/tools/bwa-mem2-app.nix b/tools/bwa-mem2-app.nix
index 8cca5a5..b303485 100644
--- a/tools/bwa-mem2-app.nix
+++ b/tools/bwa-mem2-app.nix
@@ -1,15 +1,18 @@
-{ bwa, fetchFromGitHub }:
-  bwa.overrideAttrs (_:
-    {
-      name = "bwa-mem2";
-      src = fetchFromGitHub {
-        owner = "bwa-mem2";
-        repo = "bwa-mem2";
-        rev = "f882015f7f46845f72c10094a621264f78d206d8";
-        sha256 = "1wfx8j9mwbb29jw4zxp28lajmj774jy1l5x229nf065cqr2dgyqg";
-        };
-      installPhase = ''
-        mkdir -p $out/bin
-        cp bwa-mem2 $out/bin
-        '';
-      })
+{ clangStdenv, fetchFromGitHub, zlib }:
+  clangStdenv.mkDerivation rec {
+  pname = "bwa-mem2";
+  version = "2.0";
+  src = fetchFromGitHub {
+    fetchSubmodules = true;
+    owner = "bwa-mem2";
+    repo = "bwa-mem2";
+    rev = "v${version}";
+    sha256 = "0q5wqal0nfxd3yfbmxahyaiqqmsrrplnwhplcjvz1xzw7bxwwnnj";
+  };
+  buildInputs = [ zlib ];
+  installPhase = ''
+    mkdir -p $out/bin
+    cp bwa-mem2 $out/bin
+  '';
+  disableHardening = [ "pie" ];
+}