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Diffstat (limited to 'tools/gridss-annotateVariants.nix')
| -rw-r--r-- | tools/gridss-annotateVariants.nix | 2 |
1 files changed, 2 insertions, 0 deletions
diff --git a/tools/gridss-annotateVariants.nix b/tools/gridss-annotateVariants.nix index 4f66c6c..33992c4 100644 --- a/tools/gridss-annotateVariants.nix +++ b/tools/gridss-annotateVariants.nix @@ -8,6 +8,7 @@ , softClipsToSplitReadsAttrs ? {} , identifyVariantsAttrs ? {} , flags ? null +, config ? null }: with nixpkgs; @@ -64,6 +65,7 @@ stdenv.mkDerivation rec { INPUT_VCF=input.vcf \ OUTPUT_VCF=out.vcf \ WORKING_DIR=$TMPDIR/ \ + ${optionalString config ("CONFIGURATION_FILE=" + gridssConfig config)} \ TMP_DIR=$TMPDIR/ mv out.vcf $out |