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Diffstat (limited to 'tools/gridss-extractSVReads.nix')
| -rw-r--r-- | tools/gridss-extractSVReads.nix | 2 |
1 files changed, 2 insertions, 0 deletions
diff --git a/tools/gridss-extractSVReads.nix b/tools/gridss-extractSVReads.nix index a10abf5..e3ed1cc 100644 --- a/tools/gridss-extractSVReads.nix +++ b/tools/gridss-extractSVReads.nix @@ -5,6 +5,7 @@ , flags ? null , unmappedReads ? false , minClipLength ? 5 +, config ? null }: with nixpkgs; @@ -35,6 +36,7 @@ stdenv.mkDerivation rec { METRICS_OUTPUT=$out/input.sv_metrics \ INSERT_SIZE_METRICS=$out/input.insert_size_metrics \ UNMAPPED_READS=${if unmappedReads then "true" else "false"} \ + ${optionalString config ("CONFIGURATION_FILE=" + gridssConfig config)} \ MIN_CLIP_LENGTH=${toString minClipLength} ''; } |