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Diffstat (limited to 'tools/gridss-identifyVariants.nix')
| -rw-r--r-- | tools/gridss-identifyVariants.nix | 2 |
1 files changed, 2 insertions, 0 deletions
diff --git a/tools/gridss-identifyVariants.nix b/tools/gridss-identifyVariants.nix index f44771b..16982e2 100644 --- a/tools/gridss-identifyVariants.nix +++ b/tools/gridss-identifyVariants.nix @@ -7,6 +7,7 @@ , collectMetricsAttrs ? {} , softClipsToSplitReadsAttrs ? {} , flags ? null +, config ? null }: with nixpkgs; @@ -60,6 +61,7 @@ stdenv.mkDerivation rec { ${concatMapStringsSep " " (i: "INPUT='${i}'") inputs} \ ASSEMBLY=${assembly} \ OUTPUT_VCF=out.vcf \ + ${optionalString config ("CONFIGURATION_FILE=" + gridssConfig config)} \ WORKING_DIR=$TMPDIR/ \ TMP_DIR=$TMPDIR/ |