diff options
Diffstat (limited to 'tools/gridss-softClipsToSplitReads.nix')
| -rw-r--r-- | tools/gridss-softClipsToSplitReads.nix | 4 |
1 files changed, 3 insertions, 1 deletions
diff --git a/tools/gridss-softClipsToSplitReads.nix b/tools/gridss-softClipsToSplitReads.nix index c23168f..c5d8062 100644 --- a/tools/gridss-softClipsToSplitReads.nix +++ b/tools/gridss-softClipsToSplitReads.nix @@ -5,6 +5,8 @@ , alignerStreaming ? false , flags ? null , config ? null +, heapSize ? "2G" + }: with nixpkgs; @@ -26,7 +28,7 @@ stdenv.mkDerivation rec { for f in ${bionix.bwa.index bwaIndexAttrs ref}/*; do ln -s $f done - java -Xmx2G -Dsamjdk.create_index=false \ + java -Xmx${heapSize} -Dsamjdk.create_index=false \ -cp ${bionix.gridss.jar} gridss.SoftClipsToSplitReads \ REFERENCE_SEQUENCE=ref.fa \ I=${input} \ |