1 files changed, 44 insertions, 0 deletions
diff --git a/tools/hatchet-app.nix b/tools/hatchet-app.nix
new file mode 100644
index 0000000..024d85c
--- /dev/null
+++ b/tools/hatchet-app.nix
@@ -0,0 +1,44 @@
+{ python3Packages, fetchFromGitHub, cmake, gurobi, writeText }:
+
+let
+
+  findgurobi = writeText "FindGUROBI.cmake" ''
+    set(GUROBI_CPP_LIB ${gurobi}/lib/libgurobi_c++.a)
+    set(GUROBI_LIB ${gurobi}/lib/libgurobi91.so)
+    set(GUROBI_INCLUDE_DIR ${gurobi}/include)
+    set(GUROBI_LIBRARIES ''${GUROBI_CPP_LIB} ''${GUROBI_LIB} -lpthread)
+    set(GUROBI_FOUND TRUE)
+  '';
+
+in
+python3Packages.buildPythonApplication rec {
+  pname = "HATCHet";
+  version = "0.4.9";
+
+  src = fetchFromGitHub {
+    owner = "raphael-group";
+    repo = "hatchet";
+    rev = "v${version}";
+    sha256 = "sha256-MB9XFbkLQTf6ZUPrisSzGU8Jeq6SrlMMCQtoyvx/Xvc=";
+  };
+
+  dontConfigure = true;
+
+  patchPhase = ''
+    cat ${findgurobi} > FindGUROBI.cmake
+  '';
+
+  nativeBuildInputs = [ cmake ];
+  propagatedBuildInputs = with python3Packages; [
+    biopython
+    matplotlib
+    pandas
+    psutil
+    pyomo
+    pysam
+    requests
+    seaborn
+    scikit-learn
+    scipy
+  ];
+}