1 files changed, 17 insertions, 0 deletions
diff --git a/tools/hisat2-extractSpliceSites.nix b/tools/hisat2-extractSpliceSites.nix
new file mode 100644
index 0000000..553e682
--- /dev/null
+++ b/tools/hisat2-extractSpliceSites.nix
@@ -0,0 +1,17 @@
+{ bionix
+, flags ? null
+}:
+
+gtf:
+
+with bionix;
+with lib;
+with types;
+
+stage {
+  name = "hisat2-extractSpliceSites";
+  buildInputs = with pkgs; [ hisat2 ];
+  buildCommand = ''
+    hisat2_extract_splice_sites.py ${gtf} > $out
+  '';
+}