diff options
Diffstat (limited to 'tools/platypus-callVariants.nix')
| -rw-r--r-- | tools/platypus-callVariants.nix | 9 |
1 files changed, 4 insertions, 5 deletions
diff --git a/tools/platypus-callVariants.nix b/tools/platypus-callVariants.nix index a57aa83..a5e497e 100644 --- a/tools/platypus-callVariants.nix +++ b/tools/platypus-callVariants.nix @@ -1,5 +1,4 @@ { bionix -, nixpkgs , indexAttrs ? {} , bamIndexAttrs ? {} , flags ? null @@ -7,9 +6,9 @@ inputs: -with nixpkgs; +with bionix; with lib; -with bionix.types; +with types; let @@ -21,9 +20,9 @@ in assert (length (unique refs) == 1); -stdenv.mkDerivation { +stage { name = "platypus"; - buildInputs = [ platypus ]; + buildInputs = with pkgs; [ platypus ]; buildCommand = '' ln -s ${ref} ref.fa ln -s ${bionix.samtools.faidx indexAttrs ref} ref.fa.fai |