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-rw-r--r--tools/samtools-flagstat.nix7
1 files changed, 3 insertions, 4 deletions
diff --git a/tools/samtools-flagstat.nix b/tools/samtools-flagstat.nix
index ae36c94..57d8bb6 100644
--- a/tools/samtools-flagstat.nix
+++ b/tools/samtools-flagstat.nix
@@ -1,14 +1,13 @@
{ bionix
-, nixpkgs
}:
input:
-with nixpkgs;
+with bionix;
with lib;
-stdenv.mkDerivation {
+stage {
name = "samtools-index";
- buildInputs = [ samtools ];
+ buildInputs = with pkgs; [ samtools ];
buildCommand = "samtools flagstat -@ $NIX_BUILD_CORES ${input} > $out";
}