diff options
Diffstat (limited to 'tools/samtools-sort.nix')
-rw-r--r-- | tools/samtools-sort.nix | 19 |
1 files changed, 19 insertions, 0 deletions
diff --git a/tools/samtools-sort.nix b/tools/samtools-sort.nix new file mode 100644 index 0000000..1a79c9f --- /dev/null +++ b/tools/samtools-sort.nix @@ -0,0 +1,19 @@ +{ stdenv +, callPackage +, lib +, samtools +, nameSort ? false +, flags ? null +}: + +input: + +with lib; + +stdenv.mkDerivation { + name = "samtools-sort"; + buildInputs = [ samtools ]; + buildCommand = '' + samtools sort -@ $NIX_BUILD_CORES ${optionalString nameSort "-n"} ${optionalString (flags != null) flags} ${input} > $out + ''; +} |