diff options
Diffstat (limited to 'tools/snap-align.nix')
| -rw-r--r-- | tools/snap-align.nix | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/tools/snap-align.nix b/tools/snap-align.nix index 4647142..279cf20 100644 --- a/tools/snap-align.nix +++ b/tools/snap-align.nix @@ -32,6 +32,6 @@ in stage { ${optionalString (flags != null) flags} \ | samtools sort -n > $out ''; - passthru.filetype = if bamOutput then filetype.bam {ref = ref; sorting = sort.name {};} else filetype.sam {ref = ref; sorting = sort.name {};}; + passthru.filetype = if bamOutput then filetype.bam {ref = ref; sorting = sort.none {};} else filetype.sam {ref = ref; sorting = sort.name {};}; passthru.multicore = true; } |