1 files changed, 21 insertions, 0 deletions
diff --git a/tools/snpeff-annotate.nix b/tools/snpeff-annotate.nix
new file mode 100644
index 0000000..a119c3c
--- /dev/null
+++ b/tools/snpeff-annotate.nix
@@ -0,0 +1,21 @@
+{bionix
+,nixpkgs
+,db
+,flags ? ""}:
+
+input:
+
+with nixpkgs;
+with bionix.types;
+
+assert (matchFiletype "snpeff-annotate" { vcf = _: true; } input);
+
+stdenv.mkDerivation {
+  name = "snpeff-annotate";
+  buildCommand = ''
+    ln -s ${db} ${db.name}
+    snpeff -nodownload -dataDir $TMPDIR ${db.name} ${input} > $out
+  '';
+  buildInputs = [ snpeff ];
+  passthru.filetype = input.filetype;
+}