diff options
Diffstat (limited to 'tools/star-align.nix')
-rw-r--r-- | tools/star-align.nix | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/tools/star-align.nix b/tools/star-align.nix index 0cf9ab9..44dd7f2 100644 --- a/tools/star-align.nix +++ b/tools/star-align.nix @@ -33,6 +33,6 @@ in stage { --readFilesIn ${fq input1} ${optionalString (input2 != null) (fq input2)} ${if bamOutput then "samtools view -b Aligned.out.sam > $out" else "cp Aligned.out.sam $out"} ''; - passthru.filetype = if bamOutput then filetype.bam {ref = ref; sorting = sort.name {};} else filetype.sam {ref = ref; sorting = sort.name {};}; + passthru.filetype = if bamOutput then filetype.bam {ref = ref; sorting = sort.none {};} else filetype.sam {ref = ref; sorting = sort.name {};}; passthru.multicore = true; } |