diff options
Diffstat (limited to 'tools')
| -rw-r--r-- | tools/samtools-sort.nix | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/tools/samtools-sort.nix b/tools/samtools-sort.nix index 5a02dab..e77f3db 100644 --- a/tools/samtools-sort.nix +++ b/tools/samtools-sort.nix @@ -19,7 +19,7 @@ assert (matchFiletype "samtools-sort" { bam = _: true; sam = _: true; cram = _: let outfmtR = if outfmt != null then outfmt input else input.filetype; outFmtFlags = matchFiletype "samtools-sort-outfmt" { bam = _: "-O BAM"; sam = _: "-O SAM"; cram = ref: "-O CRAM -T ${ref}"; } {filetype = outfmtR;}; - alreadySorted = matchFileSorting "samtools-sort" { name = _: nameSort; coord = _: !nameSort; } input; + alreadySorted = matchFileSorting "samtools-sort" { name = _: nameSort; coord = _: !nameSort; none = _: false;} input; in stdenv.mkDerivation { name = "samtools-sort"; buildInputs = [ samtools ]; |