aboutsummaryrefslogtreecommitdiff
path: root/examples
AgeCommit message (Collapse)Author
2021-11-03update ex-tnpair cluster exampleJustin Bedo
- fix bug with deprecated use of slurm tree - remove torque support
2021-10-29treewide reformatting and simplificationJustin Bedo
- simplify with statix - reformat with nixpkgs-fmt
2021-07-28bugfix: use unsorted type for alignment outputJustin Bedo
Most aligners are only pseudo-name sorted (i.e., pairs adjacant).
2021-02-16Add -I flags to example invocationsJustin Bedo
BioNix is expected to be in the search path, which by default is not the case. Explicitly adding include flags to the build invocation in the examples simplifies execution for new users (issue #17).
2020-11-18rewrite cluster example to usse overlayJustin Bedo
2020-11-03update example to not use explicit path referenceJustin Bedo
2020-04-10update tnpair example to run on colo828Justin Bedo
2020-03-27update exampes to use nixpkgs.lib.pipeJustin Bedo
2019-07-26Simplify exampleJustin Bedo
2019-07-08linkOutputs: refactor output linking expressionJustin Bedo
The existing linkDrv only has a singular output, making it difficult to separate the various types of output. The new functionality replaces the old with attribute sets defining the outputs. The old linkDrv is deprecated.
2019-06-11rewrite README documentationJustin Bedo
Significant expansion of README to include installation instructions and instructions on how to use with HPC.
2019-05-16example: pass bionix to call.nix pipelineJustin Bedo
2019-05-15edit example to support passing bionix as argumentJustin Bedo
2019-04-30Add examples and example READMEJustin Bedo
2019-04-30fix example data urls and hashesJustin Bedo
2019-04-30cleanup examples and stray filesJustin Bedo
2019-04-07Update example data and expand testsJustin Bedo
2018-12-19examples: update call.nix to use new pipe functionJustin Bedo
2018-12-19examples: added example tumour-normal calling pipeline scriptJustin Bedo
generated by cgit v1.2.3 (git 2.25.1) at 2024-12-27 07:37:58 +0000