| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 3 days | deprecate platypusHEADmaster | Justin Bedo | |
| 2022-11-15 | fix missing flag in examples README | Justin Bedo | |
| 2021-11-25 | Fix typo in example README | Justin Bedo | |
| 2021-11-03 | update ex-tnpair cluster example | Justin Bedo | |
| - fix bug with deprecated use of slurm tree - remove torque support | |||
| 2021-10-29 | treewide reformatting and simplification | Justin Bedo | |
| - simplify with statix - reformat with nixpkgs-fmt | |||
| 2021-07-28 | bugfix: use unsorted type for alignment output | Justin Bedo | |
| Most aligners are only pseudo-name sorted (i.e., pairs adjacant). | |||
| 2021-02-16 | Add -I flags to example invocations | Justin Bedo | |
| BioNix is expected to be in the search path, which by default is not the case. Explicitly adding include flags to the build invocation in the examples simplifies execution for new users (issue #17). | |||
| 2020-11-18 | rewrite cluster example to usse overlay | Justin Bedo | |
| 2020-11-03 | update example to not use explicit path reference | Justin Bedo | |
| 2020-04-10 | update tnpair example to run on colo828 | Justin Bedo | |
| 2020-03-27 | update exampes to use nixpkgs.lib.pipe | Justin Bedo | |
| 2019-07-26 | Simplify example | Justin Bedo | |
| 2019-07-08 | linkOutputs: refactor output linking expression | Justin Bedo | |
| The existing linkDrv only has a singular output, making it difficult to separate the various types of output. The new functionality replaces the old with attribute sets defining the outputs. The old linkDrv is deprecated. | |||
| 2019-06-11 | rewrite README documentation | Justin Bedo | |
| Significant expansion of README to include installation instructions and instructions on how to use with HPC. | |||
| 2019-05-16 | example: pass bionix to call.nix pipeline | Justin Bedo | |
| 2019-05-15 | edit example to support passing bionix as argument | Justin Bedo | |
| 2019-04-30 | Add examples and example README | Justin Bedo | |
| 2019-04-30 | fix example data urls and hashes | Justin Bedo | |
| 2019-04-30 | cleanup examples and stray files | Justin Bedo | |
| 2019-04-07 | Update example data and expand tests | Justin Bedo | |
| 2018-12-19 | examples: update call.nix to use new pipe function | Justin Bedo | |
| 2018-12-19 | examples: added example tumour-normal calling pipeline script | Justin Bedo | |
 |
index : bionix.git | |
| Functional, highly-reproducible bioinformatics pipelines |
| aboutsummaryrefslogtreecommitdiff |