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Functional, highly-reproducible bioinformatics pipelines
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qsub.nix
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Author
2019-06-11
qsub: parameterise the path to PBS utils
Justin Bedo
2019-03-15
add multicore passthru flag
Justin Bedo
2019-03-04
qsub: fix bug
Justin Bedo
2019-03-01
qsub: fix temporary directory cleanup
Justin Bedo
2019-02-06
qsub: rename flags to qsubFlags to avoid collision
Justin Bedo
2019-02-06
qsub: parameterise queue and allow arbitrary flags to be passed
Justin Bedo
2019-01-14
qsub: fix bug in stderr redirection
Justin Bedo
2018-12-21
qsub: capture stderr and stdout jointly
Justin Bedo
2018-12-20
qsub: bugfix with printing jobid for debugging
Justin Bedo
2018-12-19
qsub: echo out PBS_NODE_ID to ease debugging
Justin Bedo
2018-12-18
qsub: refactor overriding
Justin Bedo
2018-12-11
qsub: prefix directories to prevent cleanup deleting top level dir
Justin Bedo
2018-12-10
qsub: fix $TMPDIR location
Justin Bedo
2018-11-26
qsub: output non-retryable errors
Justin Bedo
2018-11-26
qsub: let sleep timing be configurable
Justin Bedo
2018-11-26
qsub: retry qsub if requested
Justin Bedo
2018-11-23
qsub: update to check job_state field
Justin Bedo
2018-11-23
qsub: be more specific with qstat polling
Justin Bedo
2018-10-22
name qsub with name of derivation: fixes #7
Justin Bedo
2018-09-28
Improve cleanup of qsub
Justin Bedo
2018-09-27
Allow changing tmpdir for qsub
Justin Bedo
2018-09-26
fix qsub expression
Justin Bedo
2018-09-26
Add qsub to bionix top level
Justin Bedo
2018-09-20
Wrap some tools and make an example pipeline
Justin Bedo