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2018-12-19gridss: simplify preprocessing and rewrite using new pipe functionJustin Bedo
2018-12-18qsub: refactor overridingJustin Bedo
2018-12-12gridss: refactor identify & annotate variantsJustin Bedo
2018-11-22gridss: restructure gridss pipelineJustin Bedo
2018-11-13Merge branch 'master' of https://github.com/PapenfussLab/bionixl-d-s
2018-11-12Attempt to integrate config file into GRIDSS stagel-d-s
2018-11-07Fix to gridss.l-d-s
2018-10-29Split gridss into constituentsJustin Bedo
Wrap each individual command for GRIDSS so that bionix executed the pipeline rather than GRIDSS. This patch introduces a "call" function that executed the whole pipeline in bionix on an arbitrary BAM file. Resolves #10.
2018-10-05implement typesJustin Bedo
2018-10-04Refactor to use bionix tree directlyJustin Bedo
2018-09-26Missing GRIDSS filesJustin Bedo