From 21a643bc66c27a5fba8b9a0683a34160ca05acf2 Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Sat, 27 Jun 2020 15:32:06 +1000
Subject: whisper: missing app expression

---
 tools/whisper-app.nix | 41 +++++++++++++++++++++++++++++++++++++++++
 1 file changed, 41 insertions(+)
 create mode 100644 tools/whisper-app.nix

diff --git a/tools/whisper-app.nix b/tools/whisper-app.nix
new file mode 100644
index 0000000..c3f6445
--- /dev/null
+++ b/tools/whisper-app.nix
@@ -0,0 +1,41 @@
+{ stdenv, fetchFromGitHub, fetchurl }:
+
+stdenv.mkDerivation {
+  pname = "whisper";
+  version = "2.0";
+
+  src = fetchFromGitHub {
+    owner = "refresh-bio";
+    repo = "Whisper";
+    rev = "v2.0";
+    sha256 = "100p2pqhli123wnqkxrvjcwnmlvcp1rk63whh121jannnw81rh2m";
+  };
+
+  patches = [ (fetchurl {
+    url = "https://github.com/refresh-bio/Whisper/commit/9ad77e7de68d91d9427cfbe6211e83cea89206ab.patch";
+    sha256 = "0i1s70rq5z4b3yik76vs1cxri4n3mpgfn91k35b3mwzhpxvfh7nn";}) ];
+
+  preConfigure = ''
+    cd src
+
+    # disable default static linking
+    sed -i 's/ -static / /' makefile
+  '';
+
+  installPhase = ''
+    mkdir -p $out/bin
+    cp whisper whisper-index $out/bin
+  '';
+
+  buildPhase = "make -j $NIX_BUILD_CORES";
+
+  meta = with stdenv.lib; {
+    description = "Short read sequence mapper";
+    license = licenses.gpl3;
+    homepage = "https://github.com/refresh-bio/whisper";
+    maintainers = with maintainers; [ jbedo ];
+    platforms = platforms.linux;
+  };
+
+}
+
-- 
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