From 4ee3f9f9c24b7dcdaa1be19aadd84454219c43f6 Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Fri, 26 Oct 2018 07:59:04 +1100
Subject: init: samtools-dict
---
tools/samtools-dict.nix | 20 ++++++++++++++++++++
tools/samtools.nix | 1 +
2 files changed, 21 insertions(+)
create mode 100644 tools/samtools-dict.nix
diff --git a/tools/samtools-dict.nix b/tools/samtools-dict.nix
new file mode 100644
index 0000000..80ec1e0
--- /dev/null
+++ b/tools/samtools-dict.nix
@@ -0,0 +1,20 @@
+{ bionix
+, nixpkgs
+, flags ? null
+}:
+
+input:
+
+with nixpkgs;
+with lib;
+with bionix.types;
+
+assert (matchFiletype "samtools-dict" { fa = _: true; } input);
+
+stdenv.mkDerivation {
+ name = "samtools-dict";
+ buildInputs = [ samtools ];
+ buildCommand = ''
+ samtools dict ${optionalString (flags != null) flags} ${input} > $out
+ '';
+}
diff --git a/tools/samtools.nix b/tools/samtools.nix
index a05f53a..ea773eb 100644
--- a/tools/samtools.nix
+++ b/tools/samtools.nix
@@ -7,6 +7,7 @@ with bionix;
faidx = callBionix ./samtools-faidx.nix;
flagstat = callBionix ./samtools-flagstat.nix;
index = callBionix ./samtools-index.nix;
+ dict = callBionix ./samtools-dict.nix;
sort = callBionix ./samtools-sort.nix;
merge = callBionix ./samtools-merge.nix;
}
--
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