From 71a479e17dd618e56a749b4a4d2f78bfd1428c1a Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Fri, 16 Aug 2019 09:34:08 +1000
Subject: mosdepth: add test
---
test-tnpair.nix | 1 +
1 file changed, 1 insertion(+)
diff --git a/test-tnpair.nix b/test-tnpair.nix
index 0f2b55d..0e082d6 100644
--- a/test-tnpair.nix
+++ b/test-tnpair.nix
@@ -86,6 +86,7 @@ let
"${tnpair.tumour.name}.fastqc.1" = check-fastqc tnpair.tumour.files.input1;
"${tnpair.tumour.name}.fastp" = check-fastp tnpair.tumour.files;
snver = snver.call { ploidy=1; } (with tnpairResult.alignments; [ normal tumour ]);
+ mosdepth = mosdepth.plot {} { inputs = mapAttrsToList (_: mosdepth.depth {}) tnpairResult.alignments; names = [ "seq1" "seq2" ]; };
inherit alignments;
};
--
cgit v1.2.3