From 795c1ce6b03bfa1cefb628026e08371f39b86296 Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Thu, 9 May 2019 13:42:47 +1000 Subject: test: enable minimap and snap tests --- test-tnpair.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/test-tnpair.nix b/test-tnpair.nix index 153a4c3..2ea93ae 100644 --- a/test-tnpair.nix +++ b/test-tnpair.nix @@ -55,8 +55,8 @@ let (ln (strelka.snvs tnpairResult.variants) "strelka.snvs.vcf") (ln (strelka.variants tnpairResult.glvariants) "strelka.gl.vcf") (ln (bowtie.align {inherit ref;} tnpair.normal.files) "alignments/bowtie-normal.bam") - #(ln (minimap2.align {inherit ref; preset = "sr"; } tnpair.normal.files) "alignments/minimap2-normal.bam") - #(ln (snap.align {inherit ref; } tnpair.normal.files) "alignments/snap-normal.bam") + (ln (minimap2.align {inherit ref; preset = "sr"; } tnpair.normal.files) "alignments/minimap2-normal.bam") + (ln (snap.align {inherit ref; } tnpair.normal.files) "alignments/snap-normal.bam") (ln (gridss.callVariants {} (with tnpairResult.alignments; [normal tumour])) "gridss") (ln (gridss.call (with tnpairResult.alignments; [normal tumour])) "gridss2") (ln (gridss.callAndAssemble (with tnpairResult.alignments; [normal tumour])) "gridss3") -- cgit v1.2.3