From 824deda0e1a7e46d4e17ff3e472dcddec220b308 Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Thu, 31 Oct 2024 13:52:24 +1100
Subject: bwa-mem2: 2.1 -> 2.2.1

---
 tools/bwa-mem2-app.nix | 10 +++++++---
 1 file changed, 7 insertions(+), 3 deletions(-)

diff --git a/tools/bwa-mem2-app.nix b/tools/bwa-mem2-app.nix
index 6ee2ab4..c668dc6 100644
--- a/tools/bwa-mem2-app.nix
+++ b/tools/bwa-mem2-app.nix
@@ -1,18 +1,22 @@
 { clangStdenv, fetchFromGitHub, zlib }:
 clangStdenv.mkDerivation rec {
   pname = "bwa-mem2";
-  version = "2.1";
+  version = "2.2.1";
+
   src = fetchFromGitHub {
     fetchSubmodules = true;
     owner = "bwa-mem2";
     repo = "bwa-mem2";
     rev = "v${version}";
-    sha256 = "sha256-T0nkO+NehAMFuwGi7HrQxq57gEsA16TlEWa2SHerxV4=";
+    sha256 = "sha256-2wDhtTlxIsJAlQ+Z72kmwbVqD9GZnd845eIRYMxOzgU=";
   };
+
   buildInputs = [ zlib ];
+
   installPhase = ''
     mkdir -p $out/bin
     cp bwa-mem2 bwa-mem2.* $out/bin
   '';
-  disableHardening = [ "pie" ];
+
+  NIX_CFLAGS_COMPILE = "-Wno-register -Wno-implicit-function-declaration";
 }
-- 
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