From ba248122fe57add929046f304844a7fa14b47207 Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Tue, 8 Dec 2020 10:01:39 +1100
Subject: add reference to bionix paper and repo

---
 references.bib | 14 +++++++++++++-
 slides.tex     | 18 +-----------------
 2 files changed, 14 insertions(+), 18 deletions(-)

diff --git a/references.bib b/references.bib
index 2ec514c..3d4075f 100644
--- a/references.bib
+++ b/references.bib
@@ -561,4 +561,16 @@ title = {Supporting data for "Unifying package managers,  workflow engines,  and
 publisher = {GigaScience Database},
 year = {2020},
 copyright = {Creative Commons Zero v1.0 Universal}
-}
\ No newline at end of file
+}
+@article{Bed2020,
+  doi = {10.1093/gigascience/giaa121},
+  url = {https://doi.org/10.1093/gigascience/giaa121},
+  year = {2020},
+  month = nov,
+  publisher = {Oxford University Press ({OUP})},
+  volume = {9},
+  number = {11},
+  author = {Justin Bed{\H{o}} and Leon Di~Stefano and Anthony T Papenfuss},
+  title = {Unifying package managers,  workflow engines,  and containers: Computational reproducibility with {BioNix}},
+  journal = {{GigaScience}}
+}
diff --git a/slides.tex b/slides.tex
index 04ed327..fa94707 100644
--- a/slides.tex
+++ b/slides.tex
@@ -179,23 +179,6 @@
   \includegraphics[width=\linewidth]{demo-graph}
 \end{frame}
 
-\begin{frame}
-  \frametitle{HPC execution}
-  \begin{minipage}{.3\textwidth}
-  \begin{overprint}
-  \onslide<1>\includegraphics[width=\linewidth]{slurm}
-  \onslide<2>\includegraphics[width=\linewidth]{cluster}
-  \end{overprint}
-  \end{minipage}
-  \begin{minipage}{.68\textwidth}
-  \begin{enumerate}
-    \item Easy implementation due to derivation overriding pattern from Nix
-    \item Call \Verb|(bionix.slurm  \{ ... \}).samtools.sort| instead of \Verb|bionix.samtools.sort|
-    \onslide<2>\item Easy to shift previous example to HPC execution
-  \end{enumerate}
-  \end{minipage}
-\end{frame}
-
 \begin{frame}
   \frametitle{Stafford Fox Rare Cancer Project}
   \begin{enumerate}
@@ -290,6 +273,7 @@
     \item BioNix provides a high degree of reproducibility
     \item Obviates the need for multiple technologies (i.e., package managers and containers)
     \item Workflows as function composition, simplifying specification
+    \item BioNix~\autocite{Bed2020} available at \url{https://github.com/PapenfussLab/BioNix}
   \end{enumerate}
 \end{frame}
 
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