From ce7603274e146a3c63d2d090c7bf2293a6b028c9 Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Thu, 5 Dec 2019 10:50:29 +1100 Subject: platypus: remove debugging code --- tools/platypus-callVariants.nix | 1 - 1 file changed, 1 deletion(-) diff --git a/tools/platypus-callVariants.nix b/tools/platypus-callVariants.nix index abe2a6b..bb0faf1 100644 --- a/tools/platypus-callVariants.nix +++ b/tools/platypus-callVariants.nix @@ -28,7 +28,6 @@ stage { ln -s ${bionix.samtools.faidx indexAttrs ref} ref.fa.fai ${concatMapStringsSep "\n" (p: "ln -s ${p} ${filename p}.bam") inputs} ${concatMapStringsSep "\n" (p: "ln -s ${bionix.samtools.index bamIndexAttrs p} ${filename p}.bai") inputs} - ls -l platypus callVariants \ --nCPU=$NIX_BUILD_CORES \ --refFile=ref.fa \ -- cgit v1.2.3