From e67120ee854880c6c47628baddb6218adfeec81c Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Wed, 23 Feb 2022 13:49:49 +1100
Subject: remove lumpy from testing

Deprecated upstream due to python2.
---
 test-tnpair.nix | 1 -
 1 file changed, 1 deletion(-)

diff --git a/test-tnpair.nix b/test-tnpair.nix
index e7d5d17..679cc67 100644
--- a/test-tnpair.nix
+++ b/test-tnpair.nix
@@ -82,7 +82,6 @@ let
     "strelka.snvs.vcf" = tnpairResult.variants.snvs;
     "strelka.gl.vcf" = tnpairResult.glvariants;
     delly = delly.call { } (with tnpairResult.alignments; [ normal tumour ]);
-    lumpy = lumpy.call { } (with tnpairResult.alignments; [ normal tumour ]);
     manta = manta.call { } (with tnpairResult.alignments; { normals = [ normal tumour ]; });
     mantaTN = manta.call { } (with tnpairResult.alignments; { normals = [ normal ]; inherit tumour; });
     mantaT = manta.call { } (with tnpairResult.alignments; { inherit tumour; });
-- 
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