From e97bc0b22b9f49d95d6b449b2b20e7222b42622d Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Sun, 7 Apr 2019 21:10:00 +1000 Subject: Update example data and expand tests --- examples/ref.fa | 80305 +----------------------------------------------- examples/sample1-1.fq | 41998 +++++++++++++++++++++++-- examples/sample1-2.fq | 42000 +++++++++++++++++++++++-- examples/sample2-1.fq | 42000 +++++++++++++++++++++++-- examples/sample2-2.fq | 42000 +++++++++++++++++++++++-- test-tnpair.nix | 13 +- 6 files changed, 156008 insertions(+), 92308 deletions(-) diff --git a/examples/ref.fa b/examples/ref.fa index fdc51e6..47a130e 100644 --- a/examples/ref.fa +++ b/examples/ref.fa @@ -1,4 +1,4 @@ ->SL1344 genome sequence +>SL1344 subset genome sequence agagattacgtctggttgcaagagatcatgacagggggaattggttgaaaataaatatat cgccagcagcacatgaacaagtttcggaatgtgatcaatttaaaaatttattgacttagg cgggcagatactttaaccaatataggaatacaagacagacaaataaaaatgacagagtac @@ -997,80306 +997,3 @@ tcaggaaatcacttcaccagagatcgatgctgaacataaacagattgtcagctattggcg cggcggttgctgcagccatggcgtcaatgtgtatcgctggaaaggaaaaacgattgaact gatcgatcgcggtgaaagctactttcagcctgtgatcagtaaaggcaaaatgtataactg ctacatgacaccttcctacgctgatgggcgtattatttatccgctagtacgtaaaaatgg -tcatttgacgccgcctcttagccttgatgggacgtgtcaatctttttggctaaccggtaa -tgttcgtaccgtgattcaggcagaaaaacccggcgctgagcccgaatcgcttgagattca -gtggcaggaaaacaaagcatcgccagggcgtttttgcccattagttccgtttgtcgaagg -tgataagctaagtccgcgtctggtgacggatgacgatgtgcctgatgcctgtatcagtcg -cgctgagtatgaagatataaaacaataggtcaggagagcattaatgacagcatccctaca -cattattcttgataccgatccgggcattgatgacgcggctgcgattgccgctgcgctgtt -cgccccccagcttgatctgcaactaataaccaccgtcgcaggtaatgtttccgttgaaaa -aacgacccgtaatgcgttgcagcttctgcatttctggaacagcgatatcccacttgccca -gggggccgcgacaccgctgctgcgtccgttacgcgatgcggcatacgtccacggcgaatc -cggtatggaaggctatgattttgtcgaccatcagcgccaaccgttggcgaagcctgcgtt -tatcgctatccgggatgtgctgatgaacgccccggagcccatgacattagtggcgattgg -gccattgaccaatattgcgttgctactgatgcactatccggagtgtgcgtgtaacattcg 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-tcgttcagatccagcgcgtggctgaagacggtatggtgcgcgccgccagccagaatccac -gcttcggaggcggtcggcagatccggctgcgccttccacagcgcgttagccaccggcagt -ttcggcagggagtgcggcgtttttacggtgtcaatgcagttgaccagcaggcgataacga -tcgccgaggtcgatcaggctggcgacgatcgccgggccggtttgggtattgaaaatcaaa -cgcgccggatcttccttgccgccaatgccgaggtgctggacgtcgaggatcggtttctct -tccaccgcgatggacggacacacttccagcatgtgcgagccgagcaccagatcgttgcct -ttctcgaagtggtaggtgtaatcctccataaatgaggtgccgccctgcagaccggttgac -atcactttcataatgcgaagcagagcggcggttttccagtcgccttcgcccgcaaagccg -tagccttgctgcatcagacgctgtacggccagacccggaagctgtttcagaccgtgtaaa -tcttcaaaggtagtagtgaatgcgtggaagccgccctgttccaggaaacgcttcataccg -agttcaatacgcgccgcctcccgcacgttctggcgtttatcgccgtggatttgggtggcg -ggcgtcagggtatagctgctttcatactcgtcaatcagagcgttgatatcgccgtcgccg -atagaattcaccacctgcaccagatcgccgaccgcccaggtattgaccgaaaagccaaat -ttgatttgcgcggccactttatcaccgtcagtcactgcgacttcacgcatattgtcgccg -aagcggcagacttttagctggcgggtatcctgtttagagaccgcctggcgcatccaggca -ccgatacgcgtatgggcctctttatcctgccagtgaccggtgacgaccgcgtgctgctgg 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