From fd497e038d6fe72cef476600496c70aa135ef297 Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Thu, 20 Dec 2018 15:23:22 +1100 Subject: README: add tnpair example to examples section --- README.md | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) (limited to 'README.md') diff --git a/README.md b/README.md index 92817c2..e5805a8 100644 --- a/README.md +++ b/README.md @@ -9,12 +9,16 @@ documentation is sparse. Install [Nix](http://nixos.org/nix) and then try `nix-build` in the examples directory. -## Example pipeline +## Example pipelines The examples directory shows a simple pipeline in the call.nix and default.nix files. You can build it with `nix-build` in the examples directory. The result will be linked to ./result, which in this example case is an empty VCF file. +There is another tumour-normal pipeline calling example consisting of `tnpair` +and `tnpair.nix`. In this case, the shell script tnpair accepts a reference and +two fastq files to run the pipeline defined in `tnpair.nix` on. + ## Contact Please come chat with us at [#bionix:cua0.org](http://matrix.to/#/#bionix:cua0.org). -- cgit v1.2.3