From 5cf9dcf15c3e384d02b81e81cb3e2c4a1de0efa4 Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Mon, 7 Dec 2020 16:30:53 +1100
Subject: first draft

---
 autogen.svg | 426 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 426 insertions(+)
 create mode 100644 autogen.svg

(limited to 'autogen.svg')

diff --git a/autogen.svg b/autogen.svg
new file mode 100644
index 0000000..0db0c5a
--- /dev/null
+++ b/autogen.svg
@@ -0,0 +1,426 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<svg
+   xmlns:dc="http://purl.org/dc/elements/1.1/"
+   xmlns:cc="http://creativecommons.org/ns#"
+   xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+   xmlns:svg="http://www.w3.org/2000/svg"
+   xmlns="http://www.w3.org/2000/svg"
+   xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd"
+   xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape"
+   width="1920"
+   height="1080"
+   viewBox="0 0 508 285.75"
+   version="1.1"
+   id="svg8"
+   inkscape:version="1.0.1 (3bc2e813f5, 2020-09-07)"
+   sodipodi:docname="autogen.svg">
+  <defs
+     id="defs2">
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+       inkscape:stockid="Arrow1Lend"
+       inkscape:isstock="true">
+      <path
+         transform="matrix(-0.8,0,0,-0.8,-10,0)"
+         style="fill:#000000;fill-opacity:1;fill-rule:evenodd;stroke:#000000;stroke-width:1pt;stroke-opacity:1"
+         d="M 0,0 5,-5 -12.5,0 5,5 Z"
+         id="path850" />
+    </marker>
+    <rect
+       x="-200.98668"
+       y="21.381561"
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+       x="59.720238"
+       y="16.630953"
+       width="859.45923"
+       height="488.2782"
+       id="rect12" />
+  </defs>
+  <sodipodi:namedview
+     id="base"
+     pagecolor="#ffffff"
+     bordercolor="#666666"
+     borderopacity="1.0"
+     inkscape:pageopacity="0.0"
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+     fit-margin-top="0"
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+     units="px" />
+  <metadata
+     id="metadata5">
+    <rdf:RDF>
+      <cc:Work
+         rdf:about="">
+        <dc:format>image/svg+xml</dc:format>
+        <dc:type
+           rdf:resource="http://purl.org/dc/dcmitype/StillImage" />
+        <dc:title></dc:title>
+      </cc:Work>
+    </rdf:RDF>
+  </metadata>
+  <g
+     inkscape:label="Layer 1"
+     inkscape:groupmode="layer"
+     id="layer1"
+     transform="translate(470.13962,-16.998291)">
+    <text
+       xml:space="preserve"
+       id="text10"
+       style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-size:7.05556px;line-height:1.25;font-family:'TeX Gyre Heros';-inkscape-font-specification:'TeX Gyre Heros, Normal';font-variant-ligatures:normal;font-variant-caps:normal;font-variant-numeric:normal;font-feature-settings:normal;text-align:start;letter-spacing:0px;word-spacing:0px;writing-mode:lr-tb;white-space:pre;shape-inside:url(#rect12);fill:#000000;fill-opacity:1;stroke:none;"
+       transform="matrix(0.59766334,0,0,0.59766334,-205.02948,6.8390357)"><tspan
+         x="59.720703"
+         y="23.044364"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">with import ./milton-slurm.nix { };
+</tspan></tspan><tspan
+         x="59.720703"
+         y="32.103703"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">let
+</tspan></tspan><tspan
+         x="59.720703"
+         y="41.163043"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">  samples = [
+</tspan></tspan><tspan
+         x="59.720703"
+         y="50.22238"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">    {
+</tspan></tspan><tspan
+         x="59.720703"
+         y="59.281722"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">      site = &quot;B1&quot;;
+</tspan></tspan><tspan
+         x="59.720703"
+         y="68.341063"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">      class = &quot;normals&quot;;
+</tspan></tspan><tspan
+         x="59.720703"
+         y="77.400404"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">      pdx = false;
+</tspan></tspan><tspan
+         x="59.720703"
+         y="86.459746"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">      r1 =
+</tspan></tspan><tspan
+         x="59.720703"
+         y="95.519087"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">        &quot;mz/Vf/SHA256E-s23731819040--c650db8ef7fcd00178178fd254970d989b1a964ee68b887f56ae0586683f7c0a.gz/SHA256E-s23731819040--c650db8ef7fcd00178178fd254970d989b1a964ee68b887f56ae0586683f7c0a.gz&quot;;
+</tspan></tspan><tspan
+         x="59.720703"
+         y="104.57843"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">      r2 =
+</tspan></tspan><tspan
+         x="59.720703"
+         y="113.63777"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">        &quot;kz/Zq/SHA256E-s25775609303--bfe116906bddf9799ba78d78be56938b21910812bebcf947f0c56cfbd5fc650a.gz/SHA256E-s25775609303--bfe116906bddf9799ba78d78be56938b21910812bebcf947f0c56cfbd5fc650a.gz&quot;;
+</tspan></tspan><tspan
+         x="59.720703"
+         y="122.69711"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">    }
+</tspan></tspan><tspan
+         x="59.720703"
+         y="131.75645"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">    {
+</tspan></tspan><tspan
+         x="59.720703"
+         y="140.81579"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">      site = &quot;B1&quot;;
+</tspan></tspan><tspan
+         x="59.720703"
+         y="149.87513"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">      class = &quot;normals&quot;;
+</tspan></tspan><tspan
+         x="59.720703"
+         y="158.93447"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">      pdx = false;
+</tspan></tspan><tspan
+         x="59.720703"
+         y="167.99381"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">      r1 =
+</tspan></tspan><tspan
+         x="59.720703"
+         y="177.05315"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">        &quot;V4/Wj/SHA256E-s17295801172--19e79e9018a60ea5715481973ff92194f6a218e5f04418303d99a2eafbaac7d9.gz/SHA256E-s17295801172--19e79e9018a60ea5715481973ff92194f6a218e5f04418303d99a2eafbaac7d9.gz&quot;;
+</tspan></tspan><tspan
+         x="59.720703"
+         y="186.11249"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">      r2 =
+</tspan></tspan><tspan
+         x="59.720703"
+         y="195.17184"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">        &quot;j7/z8/SHA256E-s18960756093--07bdcea8a80adfbf021c9082b1de5dd9a27d7325ecbff0122b82d8654245ed20.gz/SHA256E-s18960756093--07bdcea8a80adfbf021c9082b1de5dd9a27d7325ecbff0122b82d8654245ed20.gz&quot;;
+</tspan></tspan><tspan
+         x="59.720703"
+         y="204.23118"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">    }
+</tspan></tspan><tspan
+         x="59.720703"
+         y="213.29052"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">    {
+</tspan></tspan><tspan
+         x="59.720703"
+         y="222.34986"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">      site = &quot;S1&quot;;
+</tspan></tspan><tspan
+         x="59.720703"
+         y="231.4092"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">      class = &quot;tumours&quot;;
+</tspan></tspan><tspan
+         x="59.720703"
+         y="240.46854"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">      pdx = false;
+</tspan></tspan><tspan
+         x="59.720703"
+         y="249.52788"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">      r1 =
+</tspan></tspan><tspan
+         x="59.720703"
+         y="258.58723"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">        &quot;Fm/94/SHA256E-s4503271082--528808192a494d4e8dc98c0596ee8d04e45cd65c70957993ffdf6a8c2294dd51.gz/SHA256E-s4503271082--528808192a494d4e8dc98c0596ee8d04e45cd65c70957993ffdf6a8c2294dd51.gz&quot;;
+</tspan></tspan><tspan
+         x="59.720703"
+         y="267.64657"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">      r2 =
+</tspan></tspan><tspan
+         x="59.720703"
+         y="276.70589"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">        &quot;q2/Zk/SHA256E-s4582653633--d32ee809bd7d19ed497938a7a5ee36117b8f3f1b43109482da174555bcb1a45e.gz/SHA256E-s4582653633--d32ee809bd7d19ed497938a7a5ee36117b8f3f1b43109482da174555bcb1a45e.gz&quot;;
+</tspan></tspan><tspan
+         x="59.720703"
+         y="285.76522"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">    }
+</tspan></tspan><tspan
+         x="59.720703"
+         y="294.82455"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">    {
+</tspan></tspan><tspan
+         x="59.720703"
+         y="303.88387"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">      site = &quot;S1&quot;;
+</tspan></tspan><tspan
+         x="59.720703"
+         y="312.9432"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">      class = &quot;tumours&quot;;
+</tspan></tspan><tspan
+         x="59.720703"
+         y="322.00252"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">      pdx = false;
+</tspan></tspan><tspan
+         x="59.720703"
+         y="331.06185"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">      r1 =
+</tspan></tspan><tspan
+         x="59.720703"
+         y="340.12118"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">        &quot;Kf/w5/SHA256E-s34952768707--cc01c16aea8cdf162e439c8c7cb419bcb381efe95c071b9e6b97771b40f1eff8.gz/SHA256E-s34952768707--cc01c16aea8cdf162e439c8c7cb419bcb381efe95c071b9e6b97771b40f1eff8.gz&quot;;
+</tspan></tspan><tspan
+         x="59.720703"
+         y="349.1805"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">      r2 =
+</tspan></tspan><tspan
+         x="59.720703"
+         y="358.23983"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">        &quot;Gg/gk/SHA256E-s37880355076--e10fc22839c91f8900ef98afd473361ef0dcb1882b92f87140a9000237fac0e6.gz/SHA256E-s37880355076--e10fc22839c91f8900ef98afd473361ef0dcb1882b92f87140a9000237fac0e6.gz&quot;;
+</tspan></tspan><tspan
+         x="59.720703"
+         y="367.29915"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">    }
+</tspan></tspan><tspan
+         x="59.720703"
+         y="376.35848"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">    {
+</tspan></tspan><tspan
+         x="59.720703"
+         y="385.41781"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">      site = &quot;S1&quot;;
+</tspan></tspan><tspan
+         x="59.720703"
+         y="394.47713"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">      class = &quot;tumours&quot;;
+</tspan></tspan><tspan
+         x="59.720703"
+         y="403.53646"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">      pdx = false;
+</tspan></tspan><tspan
+         x="59.720703"
+         y="412.59579"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">      r1 =
+</tspan></tspan><tspan
+         x="59.720703"
+         y="421.65511"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">        &quot;xM/Q9/SHA256E-s38656117968--04dc46ef77fef4a5578d00d073682d433dfeb6337b905a2cc822b685e0cf61ea.gz/SHA256E-s38656117968--04dc46ef77fef4a5578d00d073682d433dfeb6337b905a2cc822b685e0cf61ea.gz&quot;;
+</tspan></tspan><tspan
+         x="59.720703"
+         y="430.71444"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">      r2 =
+</tspan></tspan><tspan
+         x="59.720703"
+         y="439.77376"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">        &quot;Jq/6j/SHA256E-s42454148279--ec5c092b13b76197e2659c51f11bf17c78b2caa44789c4fe006844f8bd15561e.gz/SHA256E-s42454148279--ec5c092b13b76197e2659c51f11bf17c78b2caa44789c4fe006844f8bd15561e.gz&quot;;
+</tspan></tspan><tspan
+         x="59.720703"
+         y="448.83309"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">    }
+</tspan></tspan><tspan
+         x="59.720703"
+         y="457.89242"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">  ];
+</tspan></tspan><tspan
+         x="59.720703"
+         y="466.95174"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">in import ./multisample.nix {
+</tspan></tspan><tspan
+         x="59.720703"
+         y="476.01107"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">  inherit bionix samples fetch;
+</tspan></tspan><tspan
+         x="59.720703"
+         y="485.0704"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">  name = &quot;SFRC01247&quot;;
+</tspan></tspan><tspan
+         x="59.720703"
+         y="494.12972"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">}
+</tspan></tspan><tspan
+         x="59.720703"
+         y="503.18905"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">
+</tspan></tspan></text>
+    <text
+       xml:space="preserve"
+       id="text16"
+       style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-size:7.05556px;line-height:1.25;font-family:'TeX Gyre Heros';-inkscape-font-specification:'TeX Gyre Heros, Normal';font-variant-ligatures:normal;font-variant-caps:normal;font-variant-numeric:normal;font-feature-settings:normal;text-align:start;letter-spacing:0px;word-spacing:0px;writing-mode:lr-tb;white-space:pre;shape-inside:url(#rect18);fill:#000000;fill-opacity:1;stroke:none;"
+       transform="matrix(0.59766334,0,0,0.59766334,-350.2056,73.998447)"><tspan
+         x="-200.98633"
+         y="27.794364"><tspan
+           style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-family:'Fira Code';-inkscape-font-specification:'Fira Code'">SBJ00237,MDX190227,L1901038,SFRC01247,SFRC01247-B1
+</tspan></tspan><tspan
+         x="-200.98633"
+         y="36.853703"><tspan
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