From 5cf9dcf15c3e384d02b81e81cb3e2c4a1de0efa4 Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Mon, 7 Dec 2020 16:30:53 +1100 Subject: first draft --- config.svg | 223 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 223 insertions(+) create mode 100644 config.svg (limited to 'config.svg') diff --git a/config.svg b/config.svg new file mode 100644 index 0000000..5579b6e --- /dev/null +++ b/config.svg @@ -0,0 +1,223 @@ + + + + + + + + + + + + + + image/svg+xml + + + + + + + { bionix, speed ? "normal", max-genotypes ? 0, targets ? [] }: + + + { + options.octopus.call = { + speed = mkOption { + type = types.enum [ "normal" "fast" "very-fast" ]; + default = "normal"; + }; + + max-genotypes = mkOption { + type = types.int; + default = 0; + description = "Maximum number of candidate genotypes. If zero then flag is not passed to octopus." + }; + + targets = mkOption { + type = types.either (types.listOf types.str) types.path; + default = []; + description = "either a list of genomic regions to call or a file containing a list of genomic regions to call"; + example = '' + targets = [ "chr1" "chr2:0-1,000" ]; + ''; + }; + }; +... + + -- cgit v1.2.3