From d5fd734513671d957c20a66655c98d325bb1760f Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Thu, 16 May 2019 21:18:27 +1000 Subject: slurm: renamed from sbatch --- default.nix | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) (limited to 'default.nix') diff --git a/default.nix b/default.nix index 575d176..15b8d87 100644 --- a/default.nix +++ b/default.nix @@ -36,10 +36,10 @@ let ascat = callBionix ./tools/ascat.nix {}; fastp = callBionix ./tools/fastp.nix {}; - sbatch = attrs: bionix.extend (self: super: with self; rec { - sbatchDefs = { ppn = 1; mem = 1; walltime = "24:00:00"; partition = null; slurmFlags = null; } // attrs; - sbatch = attrs: (callPackage ./lib/sbatch.nix {}) (sbatchDefs // attrs); - exec = f: x: y: sbatch (builtins.intersectAttrs sbatchDefs x) (f (builtins.removeAttrs x (builtins.attrNames sbatchDefs)) y); + slurm = attrs: bionix.extend (self: super: with self; rec { + slurmDefs = { ppn = 1; mem = 1; walltime = "24:00:00"; partition = null; slurmFlags = null; } // attrs; + slurm = attrs: (callPackage ./lib/slurm.nix {}) (slurmDefs // attrs); + exec = f: x: y: slurm (builtins.intersectAttrs slurmDefs x) (f (builtins.removeAttrs x (builtins.attrNames slurmDefs)) y); }); qsub = attrs: bionix.extend (self: super: with self; rec { qsubDefs = { ppn = 1; mem = 1; walltime = "24:00:00"; tmpDir = "/tmp"; sleepTime = 60; queue = null; qsubFlags = null; } // attrs; -- cgit v1.2.3