From ff8a11320db7131e488423e103937a342b82e652 Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Tue, 18 Jun 2019 09:56:29 +1000
Subject: slurm: fix bug with srun

salloc must call srun to actually launch job on execution node rather
than submission node
---
 default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'default.nix')

diff --git a/default.nix b/default.nix
index a0ecce0..9bc7b6c 100644
--- a/default.nix
+++ b/default.nix
@@ -38,7 +38,7 @@ let
     fastp = callBionix ./tools/fastp.nix {};
 
     slurm = attrs: bionix.extend (self: super: with self; rec {
-      slurmDefs = { ppn = 1; mem = 1; walltime = "24:00:00"; partition = null; slurmFlags = null; salloc = "/usr/bin/salloc"; } // attrs;
+      slurmDefs = { ppn = 1; mem = 1; walltime = "24:00:00"; partition = null; slurmFlags = null; salloc = "/usr/bin/salloc"; srun = "/usr/bin/srun"; } // attrs;
       slurm = attrs: (callPackage ./lib/slurm.nix {}) (slurmDefs // attrs);
       exec = f: x: y: slurm (builtins.intersectAttrs slurmDefs x) (super.exec f (builtins.removeAttrs x (builtins.attrNames slurmDefs)) y);
       });
-- 
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