From bac9248a5e08e8afdf5485a6e27cfe72e1ca5090 Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Fri, 29 Oct 2021 17:39:01 +1100
Subject: treewide reformatting and simplification

- simplify with statix
- reformat with nixpkgs-fmt
---
 examples/call.nix | 16 +++++++++-------
 1 file changed, 9 insertions(+), 7 deletions(-)

(limited to 'examples/call.nix')

diff --git a/examples/call.nix b/examples/call.nix
index 8a38fdb..81a112e 100644
--- a/examples/call.nix
+++ b/examples/call.nix
@@ -2,9 +2,10 @@
 # with the Platypus variant caller. Each input is preprocessed by aligning
 # against a reference genome (defaults to GRCH38), fixing mate information, and
 # marking duplicates. Finally platypus is called over all samples.
-{bionix ? import <bionix> {}
-,inputs
-,ref ? bionix.ref.grch38.seq }:
+{ bionix ? import <bionix> { }
+, inputs
+, ref ? bionix.ref.grch38.seq
+}:
 
 with bionix;
 with lib;
@@ -13,9 +14,10 @@ let
   preprocess = flip pipe [
     (bwa.align { inherit ref; })
     (samtools.sort { nameSort = true; })
-    (samtools.fixmate {})
-    (samtools.sort {})
-    (samtools.markdup {})
+    (samtools.fixmate { })
+    (samtools.sort { })
+    (samtools.markdup { })
   ];
 
-in platypus.call {} (map preprocess inputs)
+in
+platypus.call { } (map preprocess inputs)
-- 
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