From cdb7056a14915354d879c519dd396204e4af3959 Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Fri, 10 Apr 2020 09:47:44 +1000
Subject: update tnpair example to run on colo828

---
 examples/ex-tnpair/default.nix | 50 ++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 50 insertions(+)
 create mode 100644 examples/ex-tnpair/default.nix

(limited to 'examples/ex-tnpair/default.nix')

diff --git a/examples/ex-tnpair/default.nix b/examples/ex-tnpair/default.nix
new file mode 100644
index 0000000..f9581f8
--- /dev/null
+++ b/examples/ex-tnpair/default.nix
@@ -0,0 +1,50 @@
+{ bionix ? import <bionix> { } }:
+
+with bionix;
+with pkgs;
+with lib;
+
+let
+  pair = {
+    normal = {
+      type = "reference";
+      inputs = {
+        input1 = {
+          url =
+            "ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR275/009/ERR2752449/ERR2752449_1.fastq.gz";
+          sha256 =
+            "52f8b1b1a58b60c66ce566371dfe7a1301a787e8521a4ee41019bbf4f4d18dfe";
+        };
+        input2 = {
+          url =
+            "ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR275/009/ERR2752449/ERR2752449_2.fastq.gz";
+          sha256 =
+            "9d1e2ea772bbdf5ff3ee6a44d2d4244155b7d195a37745a2028628e2543cd8f0";
+        };
+      };
+    };
+
+    tumour = {
+      type = "melanoma";
+      inputs = {
+        input1 = {
+          url =
+            "ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR275/000/ERR2752450/ERR2752450_1.fastq.gz";
+          sha256 =
+            "2b3c98c36c2b2b6bc4682401a592a900f8eb2a143f93494ee448d6b075c12ec7";
+        };
+        input2 = {
+          url =
+            "ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR275/000/ERR2752450/ERR2752450_2.fastq.gz";
+          sha256 =
+            "0569beded708ef520dadca45ab8a70bd890caf441a0ad3749397f315dc1d2e8c";
+        };
+      };
+    };
+  };
+
+  fetch = s: mapAttrs (_: fetchFastQGZ) s.inputs;
+
+in import ./tnpair.nix {
+  inherit pair fetch bionix;
+}
-- 
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