From cdb7056a14915354d879c519dd396204e4af3959 Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Fri, 10 Apr 2020 09:47:44 +1000
Subject: update tnpair example to run on colo828

---
 examples/ex-tnpair/tnpair | 58 -----------------------------------------------
 1 file changed, 58 deletions(-)
 delete mode 100755 examples/ex-tnpair/tnpair

(limited to 'examples/ex-tnpair/tnpair')

diff --git a/examples/ex-tnpair/tnpair b/examples/ex-tnpair/tnpair
deleted file mode 100755
index d90374b..0000000
--- a/examples/ex-tnpair/tnpair
+++ /dev/null
@@ -1,58 +0,0 @@
-#!/bin/sh
-
-set -e
-
-if [[ $# -ne 5 ]] ; then
-    echo "Usage: $0 ref normal1 normal2 tumour1 tumour2"
-    exit 1
-fi
-
-function cleanup {
-    if [[ -e tnpair-$$ ]]; then
-        rm tnpair-$$
-    fi
-}
-trap cleanup INT TERM EXIT
-
-ref=`readlink -f $1`
-norm1=`readlink -f $2`
-norm2=`readlink -f $3`
-tumour1=`readlink -f $4`
-tumour2=`readlink -f $5`
-
-refhash=`nix-hash --base32 --type sha256 --flat $ref`
-norm1hash=`nix-hash --base32 --type sha256 --flat $norm1`
-norm2hash=`nix-hash --base32 --type sha256 --flat $norm2`
-tumour1hash=`nix-hash --base32 --type sha256 --flat $tumour1`
-tumour2hash=`nix-hash --base32 --type sha256 --flat $tumour2`
-
-cat > tnpair-$$ <<EOF
-import ./tnpair.nix {
-    normal = {
-        input1={
-            url="file://$norm1";
-            sha256="$norm1hash";
-        };
-        input2={
-            url="file://$norm2";
-            sha256="$norm2hash";
-        };
-    };
-    tumour = {
-        input1={
-            url = "file://$tumour1";
-            sha256 = "$tumour1hash";
-        };
-        input2={
-            url = "file://$tumour2";
-            sha256 = "$tumour2hash";
-        };
-    };
-    ref = {
-        url = "file://$ref";
-        sha256 = "$refhash";
-    };
-}
-EOF
-
-nix build --keep-going "(import ./tnpair-$$)" --no-sandbox
-- 
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