From d517a934f570427e46be8d83aa2ae4b045b069e8 Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Tue, 30 Apr 2019 13:05:17 +1000
Subject: Add examples and example README

---
 examples/ex-tnpair/tnpair     | 2 +-
 examples/ex-tnpair/tnpair.nix | 4 ++--
 2 files changed, 3 insertions(+), 3 deletions(-)

(limited to 'examples/ex-tnpair')

diff --git a/examples/ex-tnpair/tnpair b/examples/ex-tnpair/tnpair
index 5b84d5c..d90374b 100755
--- a/examples/ex-tnpair/tnpair
+++ b/examples/ex-tnpair/tnpair
@@ -55,4 +55,4 @@ import ./tnpair.nix {
 }
 EOF
 
-nix build --keep-going "(import ./tnpair-$$)"
+nix build --keep-going "(import ./tnpair-$$)" --no-sandbox
diff --git a/examples/ex-tnpair/tnpair.nix b/examples/ex-tnpair/tnpair.nix
index 2939db4..c42fe95 100644
--- a/examples/ex-tnpair/tnpair.nix
+++ b/examples/ex-tnpair/tnpair.nix
@@ -1,5 +1,5 @@
 # This is an example tumour-normal calling pipeline using strelka
-{ bionix ? import <bionix> {}
+{ bionix ? import ./../.. {}
 , normal
 , tumour
 , ref
@@ -20,7 +20,7 @@ let
   ];
 
 in linkDrv [
-  (ln (strelka.call {} {normal = preprocess normal; tumour = preprocess tumour;}) "strelka")
+  (ln (strelka.callSomatic {} {normal = preprocess normal; tumour = preprocess tumour;}) "strelka")
   (ln (preprocess normal) "normal.bam")
   (ln (preprocess tumour) "tumour.bam")
 ]
-- 
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