From a50933a96096d53c341b30d487362d0913977574 Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Tue, 3 Nov 2020 14:08:32 +1100 Subject: update example to not use explicit path reference --- examples/call.nix | 2 +- examples/default.nix | 4 ++-- 2 files changed, 3 insertions(+), 3 deletions(-) (limited to 'examples') diff --git a/examples/call.nix b/examples/call.nix index 90832ee..8c4f073 100644 --- a/examples/call.nix +++ b/examples/call.nix @@ -2,7 +2,7 @@ # with the Platypus variant caller. Each input is preprocessed by aligning # against a reference genome (defaults to GRCH38), fixing mate information, and # marking duplicates. Finally platypus is called over all samples. -{bionix ? import ./.. {} +{bionix ? import {} ,inputs ,ref ? bionix.ref.grch38.seq }: diff --git a/examples/default.nix b/examples/default.nix index e048f4e..9aace38 100644 --- a/examples/default.nix +++ b/examples/default.nix @@ -1,6 +1,6 @@ # This example uses the pipelines specified in the call.nix file on the # synthetic data in this directory. -{bionix ? import ./.. {}}: +{bionix ? import {}}: with bionix; @@ -16,7 +16,7 @@ let }; input2 = fetchFastQ { - url = "https://github.com/PapenfussLab/bionix/raw/master/examples/sample1-2.fq"; + url = "https://github.com/PapenfussLab/bionix/raw/master/examples/sample1-2.fq"; sha256 = "0czk85km6a91y0fn4b7f9q7ps19b5jf7jzwbly4sgznps7ir2kdk"; }; } -- cgit v1.2.3