From f827a0142fc2e0f95deb18bc18ed372e444471e2 Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Fri, 15 Feb 2019 15:06:40 +1100
Subject: ref: missing pkg scope on gawk

---
 lib/references.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'lib')

diff --git a/lib/references.nix b/lib/references.nix
index 6675ac4..143c17a 100755
--- a/lib/references.nix
+++ b/lib/references.nix
@@ -31,7 +31,7 @@ rec {
         url = "ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh38p7/VCF/common_all_20180418.vcf.gz";
         sha256 = "0r6m2yrcfw8bbdca515axjls30ssjas6x3qwi5qz07l3prjwmdd4";
       };
-      buildInputs = [ gawk ];
+      buildInputs = with pkgs; [ gawk ];
       buildCommand = ''
       gunzip < $src | awk '/^[^#]/{print "chr" $0;next}{print}' > $out
         '';
@@ -39,7 +39,7 @@ rec {
       };
       cosmic = {coding, noncoding}: stage rec {
         name = "cosmic-grch38";
-        buildInputs = [ gawk ];
+        buildInputs = with pkgs; [ gawk ];
         buildCommand = ''
         gunzip < ${coding} | grep '^#' > $out
         cat ${coding} ${noncoding} | gunzip | grep -v '^#' | sed 's/^/chr/' | sort -t$'\t' -k1,1 -k2,2n >> $out
-- 
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