From 98672cb1bba7221c5c8ecc363243cb47fcd13f47 Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Wed, 26 Sep 2018 10:53:53 +1000
Subject: refactor, add mosdepth, and fixes for bwa

---
 references.nix | 18 ++++++++++++++++++
 1 file changed, 18 insertions(+)
 create mode 100644 references.nix

(limited to 'references.nix')

diff --git a/references.nix b/references.nix
new file mode 100644
index 0000000..e7f1c7a
--- /dev/null
+++ b/references.nix
@@ -0,0 +1,18 @@
+{ bionix, nixpkgs }:
+
+with nixpkgs;
+
+rec {
+  grch38 = grch38-p12;
+  grch38-p12 = {
+    seq = stdenv.mkDerivation rec {
+        name = "seq-grch38.${version}";
+        version = "p12";
+        src = fetchurl {
+          url = "ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_28/GRCh38.p12.genome.fa.gz";
+          sha256 = "0ji2ggpmgnbpwbhq8mirj6h3lyy02nl2rnz7n892iq5cqpsblh4z";
+        };
+        buildCommand = "gunzip < $src > $out";
+      };
+  };
+}
-- 
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